Basic Information   [Help]    back to top..
Gene ID AT5G47670
Gene Name L1L
Gene Alias LEC1-like; LEAFY COTYLEDON1 LIKE; MNJ7.26; MNJ7_26
Gene Type protein_coding
Description "nuclear factor Y, subunit B6 (NF-YB6); FUNCTIONS IN: transcription activator binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: nucleus, intracellular; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G21970.1); Has 1452 Blast hits to 1452 proteins in 242 species: Archae - 2; Bacteria - 0; Metazoa - 484; Fungi - 345; Plants - 522; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink)."
 
GO Information   [Help] back to top
Gene IDAT5G47670
GO IDOntologyGO term
GO:0045449Processregulation of transcription
 
UniGene Information   [Help] back to top
Gene IDAT5G47670
UniGene IDAt.49140
Express Tissueseed
 
Expression Profile   [Help][Sample Description] back to top
 
Gene Structure   [Help] back to top
Gene Orientation: +           Gene Length: 1147
Gene Position on Chromosome: Start: 19315023     End: 19316169
UTR Position : AT5G47670.1: 1-38 954-1147
Coding Region: AT5G47670.1: 39-105 316-953
UTR Position : AT5G47670.2: 61-335 954-1147
Coding Region: AT5G47670.2: 336-953
 
Protein Domain Information   [Help] back to top
Model ID: AT5G47670.1 Model Length: 235
PositionPfam DomainPfam IDScoreE-value
61-126CBFD_NFYB_HMFPF008081207.6e-33
Model ID: AT5G47670.2 Model Length: 206
PositionPfam DomainPfam IDScoreE-value
32-97CBFD_NFYB_HMFPF008081207.6e-33
 
Mutant Information   [Help] back to top
 
Publication   [Help] back to top
Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR, Creelman R, Pilgrim M, Broun P, Zhang JZ, Ghandehari D, Sherman BK, Yu G. 2000. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science. 290(5499): 2105-10 [Abstract][PubMed ID: 11118137]

Kwong RW, Bui AQ, Lee H, Kwong LW, Fischer RL, Goldberg RB, Harada JJ. 2003. LEAFY COTYLEDON1-LIKE defines a class of regulators essential for embryo development. Plant Cell. 15(1): 5-18 [Abstract][PubMed ID: 12509518]

 
Sequence   [Help] back to top
AT5G47670.1
CDS sequence   Protein sequence   cDNA sequence   Genomic sequence   

AT5G47670.2
CDS sequence   Protein sequence   cDNA sequence   Genomic sequence